PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0100s0039.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 193aa    MW: 20573.8 Da    PI: 7.2894
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0100s0039.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.7e-195099255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                          ykGVr++  +g+WvAeIr+p   + r +r +lg+f+t  eAa a++aa+ kl+g
  Kaladp0100s0039.1.p 50 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFDTSREAALAYDAAAIKLYG 99
                         69****999.**********8...3.35************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.48E-2149108No hitNo description
PROSITE profilePS5103222.64250107IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-2250108IPR016177DNA-binding domain
PfamPF008471.5E-145099IPR001471AP2/ERF domain
SMARTSM003801.2E-3350113IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-3050108IPR001471AP2/ERF domain
PRINTSPR003676.4E-105162IPR001471AP2/ERF domain
PRINTSPR003676.4E-107389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MSSSYSSSST SSSSSEKLLA RGSPGRKRGQ GTSRKGCMRG KGGPENAACT YKGVRQRTWG  60
KWVAEIREPN RGARLWLGTF DTSREAALAY DAAAIKLYGS DAKLNLPDPI LNPTTNDHST  120
NNASSNNYGL ATGSGKYDAV SDAEKMDVVD EELWAEAAKT LEFPIMEGPG IFGNQCVDGN  180
GLEVVMHSPW CI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-1951107663ATERF1
3gcc_A7e-1951107663ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012448193.12e-58PREDICTED: dehydration-responsive element-binding protein 2D-like
SwissprotQ9LQZ29e-48DRE2D_ARATH; Dehydration-responsive element-binding protein 2D
TrEMBLA0A0D2TSK52e-58A0A0D2TSK5_G
STRINGBra015840.1-P2e-46(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.12e-41ERF family protein